STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PHF21BPHD finger protein 21B. (467 aa)    
Predicted Functional Partners:
ARID4A
AT-rich interactive domain-containing protein 4A isoform I.
    
 0.738
ARID4B
AT-rich interaction domain 4B.
    
 0.738
NYNRIN
NYN domain and retroviral integrase containing.
   
 0.695
WDR73
WD repeat domain 73.
   
 0.660
RBBP7
RB binding protein 7, chromatin remodeling factor.
   
 0.660
RBBP4
RB binding protein 4, chromatin remodeling factor.
   
 0.660
FANCM
FA complementation group M.
    
 0.628
RCOR3
REST corepressor 3 isoform a.
   
 0.607
RUVBL1
RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.
    
 0.592
ACTR5
Actin related protein 5; Belongs to the actin family.
    
 0.589
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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