STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PCDH20Protocadherin-20. (952 aa)    
Predicted Functional Partners:
NTN1
Netrin-1.
   
  
 0.653
KLHL1
Kelch-like protein 1.
      
 0.646
CENPA
Histone domain-containing protein.
      
 0.646
TDRD3
Tudor domain containing 3.
      
 0.646
SLIT2
Slit guidance ligand 2.
      
 0.646
TNFSF11
Tumor necrosis factor ligand superfamily member.
      
 0.646
FGF8
Fibroblast growth factor; Belongs to the heparin-binding growth factors family.
      
 0.646
ENSCJAP00000052657
Histone domain-containing protein.
      
 0.646
NAA16
N(alpha)-acetyltransferase 16, NatA auxiliary subunit.
      
 0.646
SLC28A3
Sodium/nucleoside cotransporter; Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family.
      
 0.614
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.