STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PHF2Lysine-specific demethylase PHF2. (1102 aa)    
Predicted Functional Partners:
ARID5B
AT-rich interaction domain 5B.
     
 0.793
F6WC44_CALJA
Uncharacterized protein; Belongs to the SKP1 family.
    
 0.535
SKP1
S-phase kinase-associated protein 1 isoform b; Belongs to the SKP1 family.
    
 0.535
ENSCJAP00000074230
Uncharacterized protein; Belongs to the SKP1 family.
    
 0.535
TOPBP1
DNA topoisomerase II binding protein 1.
    
   0.471
SETD2
SET domain containing 2, histone lysine methyltransferase.
   
 0.466
SUV39H2
Histone-lysine N-methyltransferase; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. Suvar3-9 subfamily.
    
 0.466
SUV39H1
Histone-lysine N-methyltransferase; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. Suvar3-9 subfamily.
    
 0.466
RING1
E3 ubiquitin-protein ligase RING1.
   
 
 0.434
KDM3B
Lysine-specific demethylase 3B.
   
 
 0.428
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.