STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LMBRD2LMBR1 domain-containing protein 2. (695 aa)    
Predicted Functional Partners:
CAPSL
Calcyphosin-like protein.
 
 
  
 0.591
ESF1
ESF1 nucleolar pre-rRNA processing protein homolog.
      
 0.575
AP4E1
Adaptor related protein complex 4 subunit epsilon 1.
   
  
 0.563
PIGO
Phosphatidylinositol glycan anchor biosynthesis class O.
    
 
 0.561
HMG20B
High mobility group 20B.
      
 0.551
FAM214A
Family with sequence similarity 214 member A.
      
 0.544
DEPDC1B
DEP domain containing 1B.
   
  
 0.539
CAPS
Calcyphosin isoform a.
 
 
  
 0.523
TMTC3
Transmembrane and TPR repeat-containing protein 3.
   
    0.487
SLC39A5
Solute carrier family 39 member 5.
   
  
 0.480
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.