PIGR protein (Callithrix jacchus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PIGR

Polymeric immunoglobulin receptor. (791 aa)

Predicted Functional Partners:

JCHAIN

0.993

IL2

0.783

PIGA

0.756

C1QTNF7

0.660

PYGL

0.646

PGK2

0.646

WDR1

0.646

PYGM

0.646

PYGB

0.646

CDK5RAP3

0.644

Your Current Organism:

Callithrix jacchus

NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C1QTNF7	CDK5RAP3	ENSCJAP00000071268	ENSCJAP00000051892	C1q domain-containing protein.	CDK5 regulatory subunit-associated protein 3.	0.646
C1QTNF7	PGK2	ENSCJAP00000071268	ENSCJAP00000041023	C1q domain-containing protein.	Phosphoglycerate kinase.	0.675
C1QTNF7	PIGR	ENSCJAP00000071268	ENSCJAP00000078535	C1q domain-containing protein.	Polymeric immunoglobulin receptor.	0.660
C1QTNF7	PYGB	ENSCJAP00000071268	ENSCJAP00000063746	C1q domain-containing protein.	Alpha-1,4 glucan phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.	0.648
C1QTNF7	PYGL	ENSCJAP00000071268	ENSCJAP00000005191	C1q domain-containing protein.	Alpha-1,4 glucan phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.	0.648
C1QTNF7	PYGM	ENSCJAP00000071268	ENSCJAP00000062762	C1q domain-containing protein.	Alpha-1,4 glucan phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.	0.648
C1QTNF7	WDR1	ENSCJAP00000071268	ENSCJAP00000059808	C1q domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.646
CDK5RAP3	C1QTNF7	ENSCJAP00000051892	ENSCJAP00000071268	CDK5 regulatory subunit-associated protein 3.	C1q domain-containing protein.	0.646
CDK5RAP3	PGK2	ENSCJAP00000051892	ENSCJAP00000041023	CDK5 regulatory subunit-associated protein 3.	Phosphoglycerate kinase.	0.646
CDK5RAP3	PIGR	ENSCJAP00000051892	ENSCJAP00000078535	CDK5 regulatory subunit-associated protein 3.	Polymeric immunoglobulin receptor.	0.644
CDK5RAP3	PYGB	ENSCJAP00000051892	ENSCJAP00000063746	CDK5 regulatory subunit-associated protein 3.	Alpha-1,4 glucan phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.	0.645
CDK5RAP3	PYGL	ENSCJAP00000051892	ENSCJAP00000005191	CDK5 regulatory subunit-associated protein 3.	Alpha-1,4 glucan phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.	0.645
CDK5RAP3	PYGM	ENSCJAP00000051892	ENSCJAP00000062762	CDK5 regulatory subunit-associated protein 3.	Alpha-1,4 glucan phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.	0.645
CDK5RAP3	WDR1	ENSCJAP00000051892	ENSCJAP00000059808	CDK5 regulatory subunit-associated protein 3.	WD_REPEATS_REGION domain-containing protein.	0.571
IL2	JCHAIN	ENSCJAP00000064247	ENSCJAP00000071904	Interleukin-2; Produced by T-cells in response to antigenic or mitogenic stimulation, this protein is required for T-cell proliferation and other activities crucial to regulation of the immune response. Belongs to the IL-2 family.	Uncharacterized protein.	0.771
IL2	PIGA	ENSCJAP00000064247	ENSCJAP00000007600	Interleukin-2; Produced by T-cells in response to antigenic or mitogenic stimulation, this protein is required for T-cell proliferation and other activities crucial to regulation of the immune response. Belongs to the IL-2 family.	Phosphatidylinositol N-acetylglucosaminyltransferase subunit A isoform 1.	0.467
IL2	PIGR	ENSCJAP00000064247	ENSCJAP00000078535	Interleukin-2; Produced by T-cells in response to antigenic or mitogenic stimulation, this protein is required for T-cell proliferation and other activities crucial to regulation of the immune response. Belongs to the IL-2 family.	Polymeric immunoglobulin receptor.	0.783
JCHAIN	IL2	ENSCJAP00000071904	ENSCJAP00000064247	Uncharacterized protein.	Interleukin-2; Produced by T-cells in response to antigenic or mitogenic stimulation, this protein is required for T-cell proliferation and other activities crucial to regulation of the immune response. Belongs to the IL-2 family.	0.771
JCHAIN	PIGA	ENSCJAP00000071904	ENSCJAP00000007600	Uncharacterized protein.	Phosphatidylinositol N-acetylglucosaminyltransferase subunit A isoform 1.	0.688
JCHAIN	PIGR	ENSCJAP00000071904	ENSCJAP00000078535	Uncharacterized protein.	Polymeric immunoglobulin receptor.	0.993