STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GKN2Gastrokine 2. (184 aa)    
Predicted Functional Partners:
GKN1
Gastrokine 1.
  
  
0.709
TFF1
Trefoil factor 1.
   
  
 0.616
C16orf91
Chromosome 16 open reading frame 91.
      
 0.593
SFMBT2
Scm like with four mbt domains 2.
      
 0.550
TSC22D2
TSC22 domain family member 2.
      
 0.518
SLC38A4
Sodium-coupled neutral amino acid transporter 4.
      
 0.461
TFF2
Trefoil factor 2.
   
  
 0.446
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.