STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DDX5Putative ATP-dependent RNA helicase DDX5; Belongs to the DEAD box helicase family. (614 aa)    
Predicted Functional Partners:
DROSHA
Ribonuclease 3 isoform 1.
   
 0.972
DHX9
DExH-box helicase 9.
   
 0.935
SF3B1
Splicing factor 3B subunit 1 isoform 1.
   
 0.923
DDX17
DEAD-box helicase 17; Belongs to the DEAD box helicase family.
  
 
0.906
NANOG
Homeobox domain-containing protein.
    
 0.901
RBM39
RNA binding motif protein 39.
   
 0.898
ESR1
Estrogen receptor; The steroid hormones and their receptors are involved in the regulation of eukaryotic gene expression and affect cellular proliferation and differentiation in target tissues.
    
 0.874
PES1
Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome; Belongs to the pescadillo family.
   
 0.844
MTREX
Superkiller viralicidic activity 2-like 2.
   
 0.829
ALYREF
Aly/REF export factor.
   
 0.829
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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