PHYHD1 protein (Callithrix jacchus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PHYHD1

Phytanoyl-CoA dioxygenase domain-containing protein 1 isoform a. (291 aa)

Predicted Functional Partners:

NUP188

0.792

PEX7

0.777

AASDH

0.675

PEX10

0.660

ALDH18A1

0.646

PEX13

0.634

PEX12

0.609

GALE

0.608

AGPS

0.606

PEX5

0.587

Your Current Organism:

Callithrix jacchus

NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AASDH	PHYHD1	ENSCJAP00000033475	ENSCJAP00000037303	Aminoadipate-semialdehyde dehydrogenase.	Phytanoyl-CoA dioxygenase domain-containing protein 1 isoform a.	0.675
AGPS	PEX10	ENSCJAP00000040047	ENSCJAP00000004540	Alkylglycerone-phosphate synthase; Catalyzes the exchange of an acyl for a long-chain alkyl group and the formation of the ether bond in the biosynthesis of ether phospholipids; Belongs to the FAD-binding oxidoreductase/transferase type 4 family.	Peroxisomal biogenesis factor 10.	0.827
AGPS	PEX12	ENSCJAP00000040047	ENSCJAP00000027334	Alkylglycerone-phosphate synthase; Catalyzes the exchange of an acyl for a long-chain alkyl group and the formation of the ether bond in the biosynthesis of ether phospholipids; Belongs to the FAD-binding oxidoreductase/transferase type 4 family.	Peroxisome assembly protein 12; Required for protein import into peroxisomes. Belongs to the pex2/pex10/pex12 family.	0.825
AGPS	PEX13	ENSCJAP00000040047	ENSCJAP00000016568	Alkylglycerone-phosphate synthase; Catalyzes the exchange of an acyl for a long-chain alkyl group and the formation of the ether bond in the biosynthesis of ether phospholipids; Belongs to the FAD-binding oxidoreductase/transferase type 4 family.	Peroxisomal biogenesis factor 13.	0.816
AGPS	PEX5	ENSCJAP00000040047	ENSCJAP00000009191	Alkylglycerone-phosphate synthase; Catalyzes the exchange of an acyl for a long-chain alkyl group and the formation of the ether bond in the biosynthesis of ether phospholipids; Belongs to the FAD-binding oxidoreductase/transferase type 4 family.	TPR_REGION domain-containing protein.	0.903
AGPS	PEX7	ENSCJAP00000040047	ENSCJAP00000066068	Alkylglycerone-phosphate synthase; Catalyzes the exchange of an acyl for a long-chain alkyl group and the formation of the ether bond in the biosynthesis of ether phospholipids; Belongs to the FAD-binding oxidoreductase/transferase type 4 family.	Peroxisomal biogenesis factor 7.	0.968
AGPS	PHYHD1	ENSCJAP00000040047	ENSCJAP00000037303	Alkylglycerone-phosphate synthase; Catalyzes the exchange of an acyl for a long-chain alkyl group and the formation of the ether bond in the biosynthesis of ether phospholipids; Belongs to the FAD-binding oxidoreductase/transferase type 4 family.	Phytanoyl-CoA dioxygenase domain-containing protein 1 isoform a.	0.606
ALDH18A1	GALE	ENSCJAP00000029812	ENSCJAP00000038901	Delta-1-pyrroline-5-carboxylate synthase; In the C-terminal section; belongs to the gamma-glutamyl phosphate reductase family.	UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.	0.714
ALDH18A1	PHYHD1	ENSCJAP00000029812	ENSCJAP00000037303	Delta-1-pyrroline-5-carboxylate synthase; In the C-terminal section; belongs to the gamma-glutamyl phosphate reductase family.	Phytanoyl-CoA dioxygenase domain-containing protein 1 isoform a.	0.646
GALE	ALDH18A1	ENSCJAP00000038901	ENSCJAP00000029812	UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.	Delta-1-pyrroline-5-carboxylate synthase; In the C-terminal section; belongs to the gamma-glutamyl phosphate reductase family.	0.714
GALE	PHYHD1	ENSCJAP00000038901	ENSCJAP00000037303	UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.	Phytanoyl-CoA dioxygenase domain-containing protein 1 isoform a.	0.608
NUP188	PHYHD1	ENSCJAP00000037697	ENSCJAP00000037303	Nucleoporin NUP188 homolog.	Phytanoyl-CoA dioxygenase domain-containing protein 1 isoform a.	0.792
PEX10	AGPS	ENSCJAP00000004540	ENSCJAP00000040047	Peroxisomal biogenesis factor 10.	Alkylglycerone-phosphate synthase; Catalyzes the exchange of an acyl for a long-chain alkyl group and the formation of the ether bond in the biosynthesis of ether phospholipids; Belongs to the FAD-binding oxidoreductase/transferase type 4 family.	0.827
PEX10	PEX12	ENSCJAP00000004540	ENSCJAP00000027334	Peroxisomal biogenesis factor 10.	Peroxisome assembly protein 12; Required for protein import into peroxisomes. Belongs to the pex2/pex10/pex12 family.	0.999
PEX10	PEX13	ENSCJAP00000004540	ENSCJAP00000016568	Peroxisomal biogenesis factor 10.	Peroxisomal biogenesis factor 13.	0.982
PEX10	PEX5	ENSCJAP00000004540	ENSCJAP00000009191	Peroxisomal biogenesis factor 10.	TPR_REGION domain-containing protein.	0.983
PEX10	PEX7	ENSCJAP00000004540	ENSCJAP00000066068	Peroxisomal biogenesis factor 10.	Peroxisomal biogenesis factor 7.	0.933
PEX10	PHYHD1	ENSCJAP00000004540	ENSCJAP00000037303	Peroxisomal biogenesis factor 10.	Phytanoyl-CoA dioxygenase domain-containing protein 1 isoform a.	0.660
PEX12	AGPS	ENSCJAP00000027334	ENSCJAP00000040047	Peroxisome assembly protein 12; Required for protein import into peroxisomes. Belongs to the pex2/pex10/pex12 family.	Alkylglycerone-phosphate synthase; Catalyzes the exchange of an acyl for a long-chain alkyl group and the formation of the ether bond in the biosynthesis of ether phospholipids; Belongs to the FAD-binding oxidoreductase/transferase type 4 family.	0.825
PEX12	PEX10	ENSCJAP00000027334	ENSCJAP00000004540	Peroxisome assembly protein 12; Required for protein import into peroxisomes. Belongs to the pex2/pex10/pex12 family.	Peroxisomal biogenesis factor 10.	0.999