VASH1 protein (Callithrix jacchus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

VASH1

Vasohibin-1. (365 aa)

Predicted Functional Partners:

ENSCJAP00000054181

0.961

F7IHJ4_CALJA

0.609

NDRG1

0.546

MAP2K5

0.497

TTL

0.495

ANGEL1

0.489

SLIT3

0.474

ROBO3

0.472

THBS2

0.467

TUBB6

0.453

Your Current Organism:

Callithrix jacchus

NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ANGEL1	VASH1	ENSCJAP00000038559	ENSCJAP00000038543	Protein angel homolog 1.	Vasohibin-1.	0.489
ENSCJAP00000054181	F7IHJ4_CALJA	ENSCJAP00000054181	ENSCJAP00000008824	Uncharacterized protein.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.615
ENSCJAP00000054181	TTL	ENSCJAP00000054181	ENSCJAP00000030320	Uncharacterized protein.	Tubulin--tyrosine ligase.	0.557
ENSCJAP00000054181	TUBB6	ENSCJAP00000054181	ENSCJAP00000046242	Uncharacterized protein.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.454
ENSCJAP00000054181	VASH1	ENSCJAP00000054181	ENSCJAP00000038543	Uncharacterized protein.	Vasohibin-1.	0.961
F7IHJ4_CALJA	ENSCJAP00000054181	ENSCJAP00000008824	ENSCJAP00000054181	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	Uncharacterized protein.	0.615
F7IHJ4_CALJA	VASH1	ENSCJAP00000008824	ENSCJAP00000038543	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	Vasohibin-1.	0.609
MAP2K5	VASH1	ENSCJAP00000003933	ENSCJAP00000038543	Dual specificity mitogen-activated protein kinase kinase 5 isoform A; Belongs to the protein kinase superfamily.	Vasohibin-1.	0.497
NDRG1	VASH1	ENSCJAP00000045727	ENSCJAP00000038543	Uncharacterized protein.	Vasohibin-1.	0.546
ROBO3	SLIT3	ENSCJAP00000078948	ENSCJAP00000053618	Roundabout guidance receptor 3.	Slit homolog 3 protein isoform 2.	0.887
ROBO3	VASH1	ENSCJAP00000078948	ENSCJAP00000038543	Roundabout guidance receptor 3.	Vasohibin-1.	0.472
SLIT3	ROBO3	ENSCJAP00000053618	ENSCJAP00000078948	Slit homolog 3 protein isoform 2.	Roundabout guidance receptor 3.	0.887
SLIT3	VASH1	ENSCJAP00000053618	ENSCJAP00000038543	Slit homolog 3 protein isoform 2.	Vasohibin-1.	0.474
THBS2	VASH1	ENSCJAP00000063885	ENSCJAP00000038543	Thrombospondin 2.	Vasohibin-1.	0.467
TTL	ENSCJAP00000054181	ENSCJAP00000030320	ENSCJAP00000054181	Tubulin--tyrosine ligase.	Uncharacterized protein.	0.557
TTL	VASH1	ENSCJAP00000030320	ENSCJAP00000038543	Tubulin--tyrosine ligase.	Vasohibin-1.	0.495
TUBB6	ENSCJAP00000054181	ENSCJAP00000046242	ENSCJAP00000054181	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	Uncharacterized protein.	0.454
TUBB6	VASH1	ENSCJAP00000046242	ENSCJAP00000038543	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	Vasohibin-1.	0.453
VASH1	ANGEL1	ENSCJAP00000038543	ENSCJAP00000038559	Vasohibin-1.	Protein angel homolog 1.	0.489
VASH1	ENSCJAP00000054181	ENSCJAP00000038543	ENSCJAP00000054181	Vasohibin-1.	Uncharacterized protein.	0.961