STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LAMP5Lysosomal associated membrane protein family member 5. (280 aa)    
Predicted Functional Partners:
RORB
RAR related orphan receptor B.
      
 0.710
CPNE5
Copine 5.
   
  
 0.634
LRRC10B
Leucine-rich repeat-containing protein 10B.
    
 
 0.627
COL22A1
Collagen type XXII alpha 1 chain.
    
 
 0.616
KCNJ4
Potassium voltage-gated channel subfamily J member 4.
   
  
 0.609
FREM3
FRAS1 related extracellular matrix 3.
   
  
 0.601
SST
Somatostatin preproprotein.
   
  
 0.599
AGMAT
Agmatinase; Belongs to the arginase family.
      
 0.598
NDNF
Neuron derived neurotrophic factor.
      
 0.590
DDN
Dendrin.
      
 0.590
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.