STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COL11A2Collagen alpha-2(XI) chain isoform 1 preproprotein. (1738 aa)    
Predicted Functional Partners:
PPP1R12A
Protein phosphatase 1 regulatory subunit.
    
 0.724
COL5A2
Collagen alpha-2(V) chain preproprotein.
  
0.714
COL2A1
Collagen type II alpha 1 chain.
  
0.706
RXRB
Retinoid X receptor beta.
    
 
 0.687
MYSM1
Myb like, SWIRM and MPN domains 1.
    
 0.637
TINAG
Tubulointerstitial nephritis antigen; Belongs to the peptidase C1 family.
   
 
 0.625
PARVA
Parvin alpha.
      
 0.617
OS9
Protein OS-9 isoform 1.
     
 0.615
ALOX15
Arachidonate 15-lipoxygenase.
      
 0.613
SLC35D1
UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter.
      
 0.596
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.