PTAFR protein (Callithrix jacchus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PTAFR

Platelet activating factor receptor; Belongs to the G-protein coupled receptor 1 family. (342 aa)

Predicted Functional Partners:

GNAQ

0.801

GNA11

0.801

GNA14

0.801

GNA15

0.796

CCR1

0.589

NCF1

0.582

GPR135

0.532

CCDC117

0.529

PECAM1

0.506

AKIRIN2

0.505

Your Current Organism:

Callithrix jacchus

NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AKIRIN2	PTAFR	ENSCJAP00000060578	ENSCJAP00000041241	Akirin 2.	Platelet activating factor receptor; Belongs to the G-protein coupled receptor 1 family.	0.505
CCDC117	PTAFR	ENSCJAP00000037352	ENSCJAP00000041241	Coiled-coil domain-containing protein 117.	Platelet activating factor receptor; Belongs to the G-protein coupled receptor 1 family.	0.529
CCR1	GNAQ	ENSCJAP00000040531	ENSCJAP00000005953	Chemokine receptor; Belongs to the G-protein coupled receptor 1 family.	Guanine nucleotide-binding protein G(Q) subunit alpha.	0.914
CCR1	PTAFR	ENSCJAP00000040531	ENSCJAP00000041241	Chemokine receptor; Belongs to the G-protein coupled receptor 1 family.	Platelet activating factor receptor; Belongs to the G-protein coupled receptor 1 family.	0.589
GNA11	GNA14	ENSCJAP00000029759	ENSCJAP00000059142	G protein subunit alpha 11.	Uncharacterized protein.	0.948
GNA11	GNA15	ENSCJAP00000029759	ENSCJAP00000056479	G protein subunit alpha 11.	Guanine nucleotide-binding protein subunit alpha-15.	0.418
GNA11	GNAQ	ENSCJAP00000029759	ENSCJAP00000005953	G protein subunit alpha 11.	Guanine nucleotide-binding protein G(Q) subunit alpha.	0.900
GNA11	PTAFR	ENSCJAP00000029759	ENSCJAP00000041241	G protein subunit alpha 11.	Platelet activating factor receptor; Belongs to the G-protein coupled receptor 1 family.	0.801
GNA14	GNA11	ENSCJAP00000059142	ENSCJAP00000029759	Uncharacterized protein.	G protein subunit alpha 11.	0.948
GNA14	GNA15	ENSCJAP00000059142	ENSCJAP00000056479	Uncharacterized protein.	Guanine nucleotide-binding protein subunit alpha-15.	0.415
GNA14	PTAFR	ENSCJAP00000059142	ENSCJAP00000041241	Uncharacterized protein.	Platelet activating factor receptor; Belongs to the G-protein coupled receptor 1 family.	0.801
GNA15	GNA11	ENSCJAP00000056479	ENSCJAP00000029759	Guanine nucleotide-binding protein subunit alpha-15.	G protein subunit alpha 11.	0.418
GNA15	GNA14	ENSCJAP00000056479	ENSCJAP00000059142	Guanine nucleotide-binding protein subunit alpha-15.	Uncharacterized protein.	0.415
GNA15	GNAQ	ENSCJAP00000056479	ENSCJAP00000005953	Guanine nucleotide-binding protein subunit alpha-15.	Guanine nucleotide-binding protein G(Q) subunit alpha.	0.415
GNA15	GPR135	ENSCJAP00000056479	ENSCJAP00000035220	Guanine nucleotide-binding protein subunit alpha-15.	G protein-coupled receptor 135; Belongs to the G-protein coupled receptor 1 family.	0.437
GNA15	PTAFR	ENSCJAP00000056479	ENSCJAP00000041241	Guanine nucleotide-binding protein subunit alpha-15.	Platelet activating factor receptor; Belongs to the G-protein coupled receptor 1 family.	0.796
GNAQ	CCR1	ENSCJAP00000005953	ENSCJAP00000040531	Guanine nucleotide-binding protein G(Q) subunit alpha.	Chemokine receptor; Belongs to the G-protein coupled receptor 1 family.	0.914
GNAQ	GNA11	ENSCJAP00000005953	ENSCJAP00000029759	Guanine nucleotide-binding protein G(Q) subunit alpha.	G protein subunit alpha 11.	0.900
GNAQ	GNA15	ENSCJAP00000005953	ENSCJAP00000056479	Guanine nucleotide-binding protein G(Q) subunit alpha.	Guanine nucleotide-binding protein subunit alpha-15.	0.415
GNAQ	PTAFR	ENSCJAP00000005953	ENSCJAP00000041241	Guanine nucleotide-binding protein G(Q) subunit alpha.	Platelet activating factor receptor; Belongs to the G-protein coupled receptor 1 family.	0.801