STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TMIETransmembrane inner ear. (154 aa)    
Predicted Functional Partners:
LHFPL5
LHFPL tetraspan subfamily member 5.
     
 0.782
CIB2
Calcium and integrin-binding family member 2 isoform 1.
     
 0.733
TMC1
Transmembrane channel-like protein.
     
 0.641
TMC2
Transmembrane channel-like protein.
     
 0.609
PCDH15
Protocadherin related 15.
   
  
 0.586
CIB3
Calcium and integrin binding family member 3.
     
 0.527
TMC3
Transmembrane channel-like protein.
     
 0.520
LHFPL4
Lipoma HMGIC fusion partner-like 4 protein.
     
 0.498
LHFPL3
LHFPL tetraspan subfamily member 3.
     
 0.498
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.