TRPS1 protein (Callithrix jacchus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

TRPS1

Transcriptional repressor GATA binding 1. (1294 aa)

Predicted Functional Partners:

EXT1

0.568

HDAC4

0.555

FOXA2

0.542

HDAC5

0.524

HDAC9

0.524

FOXA3

0.514

HDAC6

0.503

HDAC7

0.503

ENSCJAP00000068982

0.503

ENSCJAP00000073330

0.503

Your Current Organism:

Callithrix jacchus

NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCJAP00000068982	TRPS1	ENSCJAP00000068982	ENSCJAP00000046035	Uncharacterized protein.	Transcriptional repressor GATA binding 1.	0.503
ENSCJAP00000073330	TRPS1	ENSCJAP00000073330	ENSCJAP00000046035	Hist_deacetyl domain-containing protein.	Transcriptional repressor GATA binding 1.	0.503
EXT1	TRPS1	ENSCJAP00000010686	ENSCJAP00000046035	Exostosin glycosyltransferase 1; Belongs to the glycosyltransferase 47 family.	Transcriptional repressor GATA binding 1.	0.568
FOXA2	TRPS1	ENSCJAP00000010628	ENSCJAP00000046035	Forkhead box A2.	Transcriptional repressor GATA binding 1.	0.542
FOXA3	TRPS1	ENSCJAP00000022308	ENSCJAP00000046035	Forkhead box A3.	Transcriptional repressor GATA binding 1.	0.514
HDAC4	HDAC5	ENSCJAP00000017313	ENSCJAP00000066305	Histone deacetylase; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events.	Histone deacetylase; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events.	0.417
HDAC4	HDAC6	ENSCJAP00000017313	ENSCJAP00000004409	Histone deacetylase; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events.	Histone deacetylase 6.	0.410
HDAC4	HDAC9	ENSCJAP00000017313	ENSCJAP00000068919	Histone deacetylase; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events.	Histone deacetylase; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events.	0.404
HDAC4	TRPS1	ENSCJAP00000017313	ENSCJAP00000046035	Histone deacetylase; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events.	Transcriptional repressor GATA binding 1.	0.555
HDAC5	HDAC4	ENSCJAP00000066305	ENSCJAP00000017313	Histone deacetylase; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events.	Histone deacetylase; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events.	0.417
HDAC5	TRPS1	ENSCJAP00000066305	ENSCJAP00000046035	Histone deacetylase; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events.	Transcriptional repressor GATA binding 1.	0.524
HDAC6	HDAC4	ENSCJAP00000004409	ENSCJAP00000017313	Histone deacetylase 6.	Histone deacetylase; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events.	0.410
HDAC6	TRPS1	ENSCJAP00000004409	ENSCJAP00000046035	Histone deacetylase 6.	Transcriptional repressor GATA binding 1.	0.503
HDAC7	TRPS1	ENSCJAP00000019002	ENSCJAP00000046035	Histone deacetylase; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events.	Transcriptional repressor GATA binding 1.	0.503
HDAC9	HDAC4	ENSCJAP00000068919	ENSCJAP00000017313	Histone deacetylase; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events.	Histone deacetylase; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events.	0.404
HDAC9	TRPS1	ENSCJAP00000068919	ENSCJAP00000046035	Histone deacetylase; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events.	Transcriptional repressor GATA binding 1.	0.524
TRPS1	ENSCJAP00000068982	ENSCJAP00000046035	ENSCJAP00000068982	Transcriptional repressor GATA binding 1.	Uncharacterized protein.	0.503
TRPS1	ENSCJAP00000073330	ENSCJAP00000046035	ENSCJAP00000073330	Transcriptional repressor GATA binding 1.	Hist_deacetyl domain-containing protein.	0.503
TRPS1	EXT1	ENSCJAP00000046035	ENSCJAP00000010686	Transcriptional repressor GATA binding 1.	Exostosin glycosyltransferase 1; Belongs to the glycosyltransferase 47 family.	0.568
TRPS1	FOXA2	ENSCJAP00000046035	ENSCJAP00000010628	Transcriptional repressor GATA binding 1.	Forkhead box A2.	0.542