TAF6 protein (Callithrix jacchus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

TAF6

TATA-box binding protein associated factor 6. (713 aa)

Predicted Functional Partners:

TAF2

0.999

TAF10

0.999

TAF12

0.999

TAF8

0.998

TAF1

0.998

TAF4

0.998

TAF5

0.996

TBP

0.994

ENSCJAP00000075765

0.994

TADA3

0.993

Your Current Organism:

Callithrix jacchus

NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCJAP00000075765	TADA3	ENSCJAP00000075765	ENSCJAP00000029762	Uncharacterized protein.	Uncharacterized protein.	0.959
ENSCJAP00000075765	TAF1	ENSCJAP00000075765	ENSCJAP00000074458	Uncharacterized protein.	Transcription initiation factor TFIID subunit.	0.960
ENSCJAP00000075765	TAF10	ENSCJAP00000075765	ENSCJAP00000025656	Uncharacterized protein.	Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family.	0.994
ENSCJAP00000075765	TAF12	ENSCJAP00000075765	ENSCJAP00000056001	Uncharacterized protein.	Transcription initiation factor TFIID subunit 12.	0.995
ENSCJAP00000075765	TAF2	ENSCJAP00000075765	ENSCJAP00000010278	Uncharacterized protein.	TATA-box binding protein associated factor 2.	0.968
ENSCJAP00000075765	TAF4	ENSCJAP00000075765	ENSCJAP00000078348	Uncharacterized protein.	TATA-box binding protein associated factor 4.	0.993
ENSCJAP00000075765	TAF5	ENSCJAP00000075765	ENSCJAP00000033774	Uncharacterized protein.	Transcription initiation factor TFIID subunit 5.	0.993
ENSCJAP00000075765	TAF6	ENSCJAP00000075765	ENSCJAP00000046225	Uncharacterized protein.	TATA-box binding protein associated factor 6.	0.994
ENSCJAP00000075765	TAF8	ENSCJAP00000075765	ENSCJAP00000007772	Uncharacterized protein.	Transcription initiation factor TFIID subunit 8.	0.992
ENSCJAP00000075765	TBP	ENSCJAP00000075765	ENSCJAP00000038368	Uncharacterized protein.	TATA-box binding protein.	0.989
TADA3	ENSCJAP00000075765	ENSCJAP00000029762	ENSCJAP00000075765	Uncharacterized protein.	Uncharacterized protein.	0.959
TADA3	TAF10	ENSCJAP00000029762	ENSCJAP00000025656	Uncharacterized protein.	Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family.	0.995
TADA3	TAF12	ENSCJAP00000029762	ENSCJAP00000056001	Uncharacterized protein.	Transcription initiation factor TFIID subunit 12.	0.990
TADA3	TAF2	ENSCJAP00000029762	ENSCJAP00000010278	Uncharacterized protein.	TATA-box binding protein associated factor 2.	0.410
TADA3	TAF5	ENSCJAP00000029762	ENSCJAP00000033774	Uncharacterized protein.	Transcription initiation factor TFIID subunit 5.	0.923
TADA3	TAF6	ENSCJAP00000029762	ENSCJAP00000046225	Uncharacterized protein.	TATA-box binding protein associated factor 6.	0.993
TADA3	TBP	ENSCJAP00000029762	ENSCJAP00000038368	Uncharacterized protein.	TATA-box binding protein.	0.891
TAF1	ENSCJAP00000075765	ENSCJAP00000074458	ENSCJAP00000075765	Transcription initiation factor TFIID subunit.	Uncharacterized protein.	0.960
TAF1	TAF10	ENSCJAP00000074458	ENSCJAP00000025656	Transcription initiation factor TFIID subunit.	Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family.	0.998
TAF1	TAF12	ENSCJAP00000074458	ENSCJAP00000056001	Transcription initiation factor TFIID subunit.	Transcription initiation factor TFIID subunit 12.	0.998