STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HSPG2Heparan sulfate proteoglycan 2. (4391 aa)    
Predicted Functional Partners:
DAG1
Dystroglycan preproprotein.
   
 0.985
NID1
Nidogen 1.
   
 0.958
ITGB1
Integrin beta; Belongs to the integrin beta chain family.
   
 
 0.945
ITGA2
Integrin subunit alpha 2; Belongs to the integrin alpha chain family.
   
 0.922
NID2
Nidogen 2.
   
 0.910
DCN
Decorin; May affect the rate of fibrils formation.
   
 
 0.796
BGN
Biglycan; May be involved in collagen fiber assembly. Belongs to the small leucine-rich proteoglycan (SLRP) family. SLRP class I subfamily.
   
 0.761
FBLN2
Fibulin 2.
   
 0.737
FGF2
Fibroblast growth factor; Belongs to the heparin-binding growth factors family.
    
 0.706
FN1
Fibronectin isoform 1 preproprotein.
    
 0.688
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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