STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ATN1Atrophin 1. (1194 aa)    
Predicted Functional Partners:
NR2E1
Nuclear receptor subfamily 2 group E member 1.
    
 0.808
RBBP5
Uncharacterized protein.
    
 
 0.673
PDP2
[Pyruvate dehydrogenase [acetyl-transferring]]-phosphatase 2, mitochondrial.
      
 0.650
UNC79
Unc-79 homolog, NALCN channel complex subunit.
      
 0.646
F7I1P9_CALJA
Reticulon.
      
 0.636
KANSL1
KAT8 regulatory NSL complex subunit 1 isoform 1.
   
 
 0.636
ATXN2
Ataxin 2.
   
  
 0.621
CDK5R1
Cyclin-dependent kinase 5 activator.
      
 0.612
SETD1A
SET domain containing 1A, histone lysine methyltransferase.
   
 0.605
AXIN1
Axin-1 isoform a.
      
 0.600
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.