STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PDZD8PDZ domain containing 8. (1153 aa)    
Predicted Functional Partners:
TNPO3
Transportin 3.
      
 0.702
RANBP2
RAN binding protein 2.
      
 0.701
CPSF6
RRM domain-containing protein.
   
  
 0.648
TEX2
Testis-expressed sequence 2 protein.
   
  
 0.603
NSD3
Histone-lysine N-methyltransferase NSD3 isoform long.
      
 0.553
ZFYVE27
Zinc finger FYVE-type containing 27.
      
 0.552
MON1A
MON1 homolog A, secretory trafficking associated.
      
 0.542
PACS1
Phosphofurin acidic cluster sorting protein 1.
      
 0.537
LNPK
Lunapark, ER junction formation factor.
    
 
 0.530
VAPA
Vesicle-associated membrane protein-associated protein A isoform 1.
    
 
 0.508
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.