XIRP1 protein (Callithrix jacchus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

XIRP1

Xin actin binding repeat containing 1. (1121 aa)

Predicted Functional Partners:

CSRP3

0.758

CHODL

0.711

PTCHD1

0.702

TMEM43

0.684

TEX10

0.673

FBLN2

0.641

PES1

0.639

KCNQ3

0.609

MYL1

0.601

WDR18

0.577

Your Current Organism:

Callithrix jacchus

NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CHODL	FBLN2	ENSCJAP00000075924	ENSCJAP00000031082	Chondrolectin.	Fibulin 2.	0.690
CHODL	TMEM43	ENSCJAP00000075924	ENSCJAP00000031172	Chondrolectin.	Transmembrane protein 43.	0.657
CHODL	XIRP1	ENSCJAP00000075924	ENSCJAP00000048075	Chondrolectin.	Xin actin binding repeat containing 1.	0.711
CSRP3	MYL1	ENSCJAP00000069764	ENSCJAP00000075829	Cysteine and glycine rich protein 3.	Myosin light chain 1.	0.714
CSRP3	XIRP1	ENSCJAP00000069764	ENSCJAP00000048075	Cysteine and glycine rich protein 3.	Xin actin binding repeat containing 1.	0.758
FBLN2	CHODL	ENSCJAP00000031082	ENSCJAP00000075924	Fibulin 2.	Chondrolectin.	0.690
FBLN2	TMEM43	ENSCJAP00000031082	ENSCJAP00000031172	Fibulin 2.	Transmembrane protein 43.	0.621
FBLN2	XIRP1	ENSCJAP00000031082	ENSCJAP00000048075	Fibulin 2.	Xin actin binding repeat containing 1.	0.641
KCNQ3	PTCHD1	ENSCJAP00000073664	ENSCJAP00000009327	Potassium voltage-gated channel subfamily Q member 3; Belongs to the potassium channel family.	Patched domain-containing protein 1.	0.569
KCNQ3	XIRP1	ENSCJAP00000073664	ENSCJAP00000048075	Potassium voltage-gated channel subfamily Q member 3; Belongs to the potassium channel family.	Xin actin binding repeat containing 1.	0.609
MYL1	CSRP3	ENSCJAP00000075829	ENSCJAP00000069764	Myosin light chain 1.	Cysteine and glycine rich protein 3.	0.714
MYL1	XIRP1	ENSCJAP00000075829	ENSCJAP00000048075	Myosin light chain 1.	Xin actin binding repeat containing 1.	0.601
PES1	TEX10	ENSCJAP00000019595	ENSCJAP00000075895	Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome; Belongs to the pescadillo family.	Testis-expressed sequence 10 protein isoform 1.	0.902
PES1	WDR18	ENSCJAP00000019595	ENSCJAP00000037373	Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome; Belongs to the pescadillo family.	WD repeat domain 18.	0.918
PES1	XIRP1	ENSCJAP00000019595	ENSCJAP00000048075	Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome; Belongs to the pescadillo family.	Xin actin binding repeat containing 1.	0.639
PTCHD1	KCNQ3	ENSCJAP00000009327	ENSCJAP00000073664	Patched domain-containing protein 1.	Potassium voltage-gated channel subfamily Q member 3; Belongs to the potassium channel family.	0.569
PTCHD1	XIRP1	ENSCJAP00000009327	ENSCJAP00000048075	Patched domain-containing protein 1.	Xin actin binding repeat containing 1.	0.702
TEX10	PES1	ENSCJAP00000075895	ENSCJAP00000019595	Testis-expressed sequence 10 protein isoform 1.	Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome; Belongs to the pescadillo family.	0.902
TEX10	WDR18	ENSCJAP00000075895	ENSCJAP00000037373	Testis-expressed sequence 10 protein isoform 1.	WD repeat domain 18.	0.972
TEX10	XIRP1	ENSCJAP00000075895	ENSCJAP00000048075	Testis-expressed sequence 10 protein isoform 1.	Xin actin binding repeat containing 1.	0.673