STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZC3H11AZinc finger CCCH domain-containing protein 11A. (810 aa)    
Predicted Functional Partners:
SARNP
SAP domain containing ribonucleoprotein.
    
 0.868
POLDIP3
Polymerase delta-interacting protein 3 isoform 1.
     
 0.844
ALYREF
Aly/REF export factor.
     
 0.839
THOC5
THO complex subunit 5 homolog.
    
 0.803
ENSCJAP00000072439
Uncharacterized protein.
   
 0.797
THOC2
THO complex subunit 2; Required for efficient export of polyadenylated RNA and spliced mRNA. Acts as component of the THO subcomplex of the TREX complex which is thought to couple mRNA transcription, processing and nuclear export, and which specifically associates with spliced mRNA and not with unspliced pre-mRNA. TREX is recruited to spliced mRNAs by a transcription-independent mechanism, binds to mRNA upstream of the exon-junction complex (EJC) and is recruited in a splicing- and cap- dependent manner to a region near the 5' end of the mRNA where it functions in mRNA export to the cy [...]
   
 0.793
CASC3
CASC3 exon junction complex subunit.
     
 0.785
ZBED6
Zinc finger BED-type containing 6.
      
 0.758
CHTOP
Chromatin target of PRMT1 protein isoform 2.
    
 0.756
CHTOP-2
Uncharacterized protein.
    
 0.756
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.