STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRIM4Tripartite motif containing 4. (500 aa)    
Predicted Functional Partners:
MEX3C
Mex-3 RNA binding family member C.
    
 0.664
TRIM66
Tripartite motif containing 66.
      
 0.601
TRIM23
E3 ubiquitin-protein ligase TRIM23 isoform alpha.
    
 0.589
ZNF248
Zinc finger protein 248.
   
 0.563
ZCCHC3
Zinc finger CCHC domain-containing protein 3.
   
 0.532
TRIM29
Tripartite motif containing 29.
    
 0.524
TRIM42
Tripartite motif containing 42.
      
 0.522
TRIM44
Tripartite motif containing 44.
    
 
 0.467
DDX58
Putative ATP-dependent RNA helicase DDX58.
    
 0.463
MAP3K4
Protein kinase domain-containing protein.
    
 
 0.462
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.