STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NEUROD4Neurogenic differentiation factor. (367 aa)    
Predicted Functional Partners:
TCF12
Transcription factor 12 isoform a.
    
 
 0.754
CDH3
Cadherin 3; Cadherins are calcium-dependent cell adhesion proteins.
   
  
 0.623
FOXN4
Forkhead box N4.
   
  
 0.602
TCF4
Transcription factor 4.
    
 
 0.571
TCF3
Transcription factor 3.
    
 
 0.566
GBX1
Gastrulation brain homeobox 1.
   
  
 0.533
NECAB1
N-terminal EF-hand calcium binding protein 1.
   
  
 0.531
PAX6
Paired box 6.
   
 
 0.494
ASCL1
Achaete-scute family bHLH transcription factor 1.
   
 
 0.491
GART
Trifunctional purine biosynthetic protein adenosine-3; In the C-terminal section; belongs to the GART family. In the central section; belongs to the AIR synthase family.
   
  
 0.472
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.