DNAH3 protein (Callithrix jacchus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

DNAH3

Uncharacterized protein. (663 aa)

Predicted Functional Partners:

DNAH6

0.939

DNAH12

0.937

ENSCJAP00000073380

0.900

ENSCJAP00000058693

0.899

GAS2L2

0.791

AP1G1

0.772

DNAH2

0.759

GAS2L1

0.697

SOD1

0.656

TPPP3

0.615

Your Current Organism:

Callithrix jacchus

NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AP1G1	DNAH3	ENSCJAP00000027692	ENSCJAP00000052435	AP-1 complex subunit gamma.	Uncharacterized protein.	0.772
AP1G1	ENSCJAP00000058693	ENSCJAP00000027692	ENSCJAP00000058693	AP-1 complex subunit gamma.	AAA_6 domain-containing protein.	0.772
DNAH12	DNAH3	ENSCJAP00000055319	ENSCJAP00000052435	Uncharacterized protein.	Uncharacterized protein.	0.937
DNAH12	GAS2L1	ENSCJAP00000055319	ENSCJAP00000037171	Uncharacterized protein.	Growth arrest specific 2 like 1.	0.778
DNAH12	GAS2L2	ENSCJAP00000055319	ENSCJAP00000027518	Uncharacterized protein.	Growth arrest specific 2 like 2.	0.825
DNAH12	SOD1	ENSCJAP00000055319	ENSCJAP00000016448	Uncharacterized protein.	Superoxide dismutase [Cu-Zn]; Destroys radicals which are normally produced within the cells and which are toxic to biological systems; Belongs to the Cu-Zn superoxide dismutase family.	0.656
DNAH12	TPPP3	ENSCJAP00000055319	ENSCJAP00000061076	Uncharacterized protein.	Tubulin polymerization-promoting protein family member 3.	0.691
DNAH2	DNAH3	ENSCJAP00000027529	ENSCJAP00000052435	Dynein axonemal heavy chain 2.	Uncharacterized protein.	0.759
DNAH2	DNAH6	ENSCJAP00000027529	ENSCJAP00000036818	Dynein axonemal heavy chain 2.	Dynein axonemal heavy chain 6.	0.474
DNAH2	GAS2L1	ENSCJAP00000027529	ENSCJAP00000037171	Dynein axonemal heavy chain 2.	Growth arrest specific 2 like 1.	0.589
DNAH2	GAS2L2	ENSCJAP00000027529	ENSCJAP00000027518	Dynein axonemal heavy chain 2.	Growth arrest specific 2 like 2.	0.707
DNAH2	SOD1	ENSCJAP00000027529	ENSCJAP00000016448	Dynein axonemal heavy chain 2.	Superoxide dismutase [Cu-Zn]; Destroys radicals which are normally produced within the cells and which are toxic to biological systems; Belongs to the Cu-Zn superoxide dismutase family.	0.650
DNAH2	TPPP3	ENSCJAP00000027529	ENSCJAP00000061076	Dynein axonemal heavy chain 2.	Tubulin polymerization-promoting protein family member 3.	0.567
DNAH3	AP1G1	ENSCJAP00000052435	ENSCJAP00000027692	Uncharacterized protein.	AP-1 complex subunit gamma.	0.772
DNAH3	DNAH12	ENSCJAP00000052435	ENSCJAP00000055319	Uncharacterized protein.	Uncharacterized protein.	0.937
DNAH3	DNAH2	ENSCJAP00000052435	ENSCJAP00000027529	Uncharacterized protein.	Dynein axonemal heavy chain 2.	0.759
DNAH3	DNAH6	ENSCJAP00000052435	ENSCJAP00000036818	Uncharacterized protein.	Dynein axonemal heavy chain 6.	0.939
DNAH3	ENSCJAP00000058693	ENSCJAP00000052435	ENSCJAP00000058693	Uncharacterized protein.	AAA_6 domain-containing protein.	0.899
DNAH3	ENSCJAP00000073380	ENSCJAP00000052435	ENSCJAP00000073380	Uncharacterized protein.	Uncharacterized protein.	0.900
DNAH3	GAS2L1	ENSCJAP00000052435	ENSCJAP00000037171	Uncharacterized protein.	Growth arrest specific 2 like 1.	0.697