STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YPEL3Yippee domain-containing protein. (279 aa)    
Predicted Functional Partners:
UGGT2
UDP-glucose glycoprotein glucosyltransferase 2.
      
 0.806
ZNF398
Zinc finger protein 398.
      
 0.792
EMG1
Ribosomal RNA small subunit methyltransferase NEP1.
      
 0.759
ACOT13
Acyl-coenzyme A thioesterase 13 isoform 1.
      
 0.753
BAG4
BAG family molecular chaperone regulator 4 isoform 1.
      
 0.731
PCMT1
Protein-L-isoaspartate O-methyltransferase.
      
 0.729
NEK7
Serine/threonine-protein kinase Nek7; Belongs to the protein kinase superfamily.
      
 0.726
RPL6
60S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family.
   
  
 0.708
MRPL16
39S ribosomal protein L16, mitochondrial; Belongs to the universal ribosomal protein uL16 family.
   
  
 0.693
TDP2
Tyrosyl-DNA phosphodiesterase 2.
      
 0.640
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.