STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RNF130E3 ubiquitin-protein ligase RNF130. (419 aa)    
Predicted Functional Partners:
RNF223
RING finger protein 223.
     
 0.795
CGRRF1
Cell growth regulator with RING finger domain protein 1.
     
 0.793
RNF144A
RBR-type E3 ubiquitin transferase.
     
 0.793
RNFT2
Ring finger protein, transmembrane 2.
      
 0.792
RNF183
Ring finger protein 183.
     
 0.787
RNF145
Ring finger protein 145.
    
 
 0.785
RNFT1
Ring finger protein, transmembrane 1.
      
 0.782
TMEM129
Transmembrane protein 129.
      
 0.779
RNF121
RING finger protein 121.
      
 0.770
RNF170
E3 ubiquitin-protein ligase RNF170 isoform a.
      
 0.734
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.