STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EMX1Empty spiracles homeobox 1. (290 aa)    
Predicted Functional Partners:
TBR1
T-box brain transcription factor 1.
    
 0.810
FOXG1
Forkhead box G1.
   
 0.810
CELSR3
Cadherin EGF LAG seven-pass G-type receptor 3; Belongs to the G-protein coupled receptor 2 family.
   
  
 0.744
NEUROD2
Neurogenic differentiation factor.
   
  
 0.579
PVALB
Parvalbumin alpha; Belongs to the parvalbumin family.
      
 0.575
FEZF2
FEZ family zinc finger 2.
   
 
 0.568
NEUROD6
Neurogenic differentiation factor.
   
  
 0.544
OLIG2
Oligodendrocyte lineage transcription factor 2 (Predicted).
   
  
 0.539
CUX2
Homeobox protein cut-like.
      
 0.538
DMRT3
DM domain-containing protein.
   
 
 0.534
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.