STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RBM14RRM domain-containing protein. (129 aa)    
Predicted Functional Partners:
SFPQ
Splicing factor, proline-and glutamine-rich.
   
 
 0.902
NONO
Non-POU domain-containing octamer-binding protein isoform 1.
   
 
 0.837
PSPC1
Paraspeckle component 1.
   
 
 0.702
ENSCJAP00000068136
Uncharacterized protein.
   
 
 0.673
C22H19orf53
Leydig cell tumor 10 kDa protein homolog.
      
 0.630
TAF6L
TAF6-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 6L.
   
  
 0.626
SNRNP70
Small nuclear ribonucleoprotein U1 subunit 70.
   
 
 0.613
HNRNPK
Heterogeneous nuclear ribonucleoprotein K isoform a.
   
 
 0.601
PRPF19
Pre-mRNA-processing factor 19.
   
 
 0.587
RUNX1
Runt-related transcription factor; Forms the heterodimeric complex core-binding factor (CBF) with CBFB. RUNX members modulate the transcription of their target genes through recognizing the core consensus binding sequence 5'- TGTGGT-3', or very rarely, 5'-TGCGGT-3', within their regulatory regions via their runt domain, while CBFB is a non-DNA-binding regulatory subunit that allosterically enhances the sequence-specific DNA-binding capacity of RUNX.
    
  0.574
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.