STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CLN3Battenin. (489 aa)    
Predicted Functional Partners:
CLN6
CLN6 transmembrane ER protein.
      
 0.942
CLN5
Uncharacterized protein.
    
 
 0.934
CLN8
CLN8 transmembrane ER and ERGIC protein.
      
 0.926
MFSD8
Major facilitator superfamily domain containing 8.
   
 
 0.877
HMGCL
Hydroxymethylglutaryl-CoA lyase, mitochondrial isoform 1.
 
      0.870
HMGCLL1
3-hydroxymethyl-3-methylglutaryl-CoA lyase, cytoplasmic isoform b.
 
      0.867
TPP1
Tripeptidyl peptidase 1.
      
 0.847
SBDS
Ribosome maturation protein SBDS.
    
 
 0.796
PPT1
Palmitoyl-protein thioesterase 1.
    
 
 0.720
CTSF
Cathepsin F; Belongs to the peptidase C1 family.
      
 0.699
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.