STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LMX1BLIM homeobox transcription factor 1 beta. (402 aa)    
Predicted Functional Partners:
LDB1
LIM domain binding 1.
    
 0.870
LDB2
LIM domain-binding protein 2 isoform a.
    
 0.701
FOXA2
Forkhead box A2.
    
 
 0.654
MAB21L1
Protein mab-21-like 1.
    
 
 0.654
SSBP3
Single-stranded DNA-binding protein 3 isoform a.
    
   0.644
PBX3
Pre-B-cell leukemia transcription factor 3 isoform 1.
    
 
 0.640
ASCL1
Achaete-scute family bHLH transcription factor 1.
    
 0.640
FGF8
Fibroblast growth factor; Belongs to the heparin-binding growth factors family.
      
 0.635
SHH
Hedgehog protein; Intercellular signal essential for a variety of patterning events during development.
    
 
 0.635
MEIS2
Homeobox protein Meis2 isoform c.
    
 
 0.623
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.