FARSA protein (Callithrix jacchus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

FARSA

Phenylalanine--tRNA ligase alpha subunit. (508 aa)

Predicted Functional Partners:

FARSB

0.999

LRRC47

0.987

FARS2

0.948

EPRS1

0.917

YARS1

0.886

VARS1

0.853

QARS1

0.779

TUFM

0.778

DARS2

0.750

MARS

0.749

Your Current Organism:

Callithrix jacchus

NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DARS2	EPRS1	ENSCJAP00000017030	ENSCJAP00000079038	Aspartyl-tRNA synthetase 2, mitochondrial.	Uncharacterized protein.	0.965
DARS2	FARS2	ENSCJAP00000017030	ENSCJAP00000039770	Aspartyl-tRNA synthetase 2, mitochondrial.	Phenylalanyl-tRNA synthetase 2, mitochondrial.	0.812
DARS2	FARSA	ENSCJAP00000017030	ENSCJAP00000058921	Aspartyl-tRNA synthetase 2, mitochondrial.	Phenylalanine--tRNA ligase alpha subunit.	0.750
DARS2	FARSB	ENSCJAP00000017030	ENSCJAP00000073668	Aspartyl-tRNA synthetase 2, mitochondrial.	Phenylalanyl-tRNA synthetase subunit beta.	0.668
DARS2	LRRC47	ENSCJAP00000017030	ENSCJAP00000005109	Aspartyl-tRNA synthetase 2, mitochondrial.	Leucine rich repeat containing 47.	0.668
DARS2	MARS	ENSCJAP00000017030	ENSCJAP00000013517	Aspartyl-tRNA synthetase 2, mitochondrial.	Methionine--tRNA ligase, cytoplasmic; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.742
DARS2	QARS1	ENSCJAP00000017030	ENSCJAP00000006456	Aspartyl-tRNA synthetase 2, mitochondrial.	Glutamine--tRNA ligase isoform a; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.752
DARS2	TUFM	ENSCJAP00000017030	ENSCJAP00000011487	Aspartyl-tRNA synthetase 2, mitochondrial.	Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	0.695
DARS2	VARS1	ENSCJAP00000017030	ENSCJAP00000042138	Aspartyl-tRNA synthetase 2, mitochondrial.	Valyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.925
DARS2	YARS1	ENSCJAP00000017030	ENSCJAP00000042665	Aspartyl-tRNA synthetase 2, mitochondrial.	Tyrosine--tRNA ligase.	0.895
EPRS1	DARS2	ENSCJAP00000079038	ENSCJAP00000017030	Uncharacterized protein.	Aspartyl-tRNA synthetase 2, mitochondrial.	0.965
EPRS1	FARS2	ENSCJAP00000079038	ENSCJAP00000039770	Uncharacterized protein.	Phenylalanyl-tRNA synthetase 2, mitochondrial.	0.852
EPRS1	FARSA	ENSCJAP00000079038	ENSCJAP00000058921	Uncharacterized protein.	Phenylalanine--tRNA ligase alpha subunit.	0.917
EPRS1	FARSB	ENSCJAP00000079038	ENSCJAP00000073668	Uncharacterized protein.	Phenylalanyl-tRNA synthetase subunit beta.	0.942
EPRS1	LRRC47	ENSCJAP00000079038	ENSCJAP00000005109	Uncharacterized protein.	Leucine rich repeat containing 47.	0.942
EPRS1	MARS	ENSCJAP00000079038	ENSCJAP00000013517	Uncharacterized protein.	Methionine--tRNA ligase, cytoplasmic; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.999
EPRS1	QARS1	ENSCJAP00000079038	ENSCJAP00000006456	Uncharacterized protein.	Glutamine--tRNA ligase isoform a; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.999
EPRS1	TUFM	ENSCJAP00000079038	ENSCJAP00000011487	Uncharacterized protein.	Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	0.766
EPRS1	VARS1	ENSCJAP00000079038	ENSCJAP00000042138	Uncharacterized protein.	Valyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.999
EPRS1	YARS1	ENSCJAP00000079038	ENSCJAP00000042665	Uncharacterized protein.	Tyrosine--tRNA ligase.	0.999