STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FOXF1Forkhead box F1. (430 aa)    
Predicted Functional Partners:
NKX3-2
NK3 homeobox 2.
   
 
 0.649
BMP4
Bone morphogenetic protein 4 preproprotein.
     
 0.606
SHH
Hedgehog protein; Intercellular signal essential for a variety of patterning events during development.
     
 0.597
MIXL1
Mix paired-like homeobox.
    
 0.588
GATA4
GATA binding protein 4.
   
 0.580
TBXT
T-box transcription factor T.
     
 0.564
PAX1
Paired box 1.
   
  
 0.551
NKX2-5
NK2 homeobox 5.
    
 
 0.527
GLI3
GLI family zinc finger 3.
    
 0.505
IHH
Hedgehog protein; Intercellular signal essential for a variety of patterning events during development.
     
 0.491
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.