STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PLAAT5Phospholipase A and acyltransferase 5. (280 aa)    
Predicted Functional Partners:
RDH13
Retinol dehydrogenase 13 isoform 1; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
      
 0.620
DAGLA
Sn1-specific diacylglycerol lipase alpha.
      
 0.585
RGR
Retinal G protein coupled receptor; Belongs to the G-protein coupled receptor 1 family. Opsin subfamily.
      
 0.567
KLHDC3
Kelch domain-containing protein 3.
      
 0.567
HRAS
HRas proto-oncogene, GTPase.
      
 0.562
SPATA4
Spermatogenesis associated 4.
      
 0.557
PHKG2
Phosphorylase b kinase gamma catalytic chain, testis/liver isoform isoform 1; Belongs to the protein kinase superfamily.
      
 0.541
SFI1
Protein SFI1 homolog; Plays a role in the dynamic structure of centrosome- associated contractile fibers via its interaction with CETN2. Belongs to the SFI1 family.
      
 0.524
ZMYND10
Zinc finger MYND domain-containing protein 10; Plays a role in axonemal structure organization and motility. Involved in axonemal pre-assembly of inner and outer dynein arms (IDA and ODA, respectively) for proper axoneme building for cilia motility. May act by indirectly regulating transcription of dynein proteins. Belongs to the ZMYND10 family.
      
 0.520
LACE1
Lactation elevated protein 1.
      
 0.476
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.