ENSCJAP00000062019 protein (Callithrix jacchus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSCJAP00000062019

RRM domain-containing protein. (153 aa)

Predicted Functional Partners:

ENSCJAP00000062654

0.894

PSPC1

0.855

SFPQ

0.825

ENSCJAP00000068136

0.819

RPS7

0.619

ENSCJAP00000055055

0.619

ENSCJAP00000064207

0.619

ENSCJAP00000068453

0.619

ENSCJAP00000068847

0.619

ENSCJAP00000069135

0.619

Your Current Organism:

Callithrix jacchus

NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCJAP00000055055	ENSCJAP00000062019	ENSCJAP00000055055	ENSCJAP00000062019	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.	RRM domain-containing protein.	0.619
ENSCJAP00000062019	ENSCJAP00000055055	ENSCJAP00000062019	ENSCJAP00000055055	RRM domain-containing protein.	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.	0.619
ENSCJAP00000062019	ENSCJAP00000062654	ENSCJAP00000062019	ENSCJAP00000062654	RRM domain-containing protein.	RRM domain-containing protein.	0.894
ENSCJAP00000062019	ENSCJAP00000064207	ENSCJAP00000062019	ENSCJAP00000064207	RRM domain-containing protein.	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.	0.619
ENSCJAP00000062019	ENSCJAP00000068136	ENSCJAP00000062019	ENSCJAP00000068136	RRM domain-containing protein.	Uncharacterized protein.	0.819
ENSCJAP00000062019	ENSCJAP00000068453	ENSCJAP00000062019	ENSCJAP00000068453	RRM domain-containing protein.	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.	0.619
ENSCJAP00000062019	ENSCJAP00000068847	ENSCJAP00000062019	ENSCJAP00000068847	RRM domain-containing protein.	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.	0.619
ENSCJAP00000062019	ENSCJAP00000069135	ENSCJAP00000062019	ENSCJAP00000069135	RRM domain-containing protein.	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.	0.619
ENSCJAP00000062019	PSPC1	ENSCJAP00000062019	ENSCJAP00000008299	RRM domain-containing protein.	Paraspeckle component 1.	0.855
ENSCJAP00000062019	RPS7	ENSCJAP00000062019	ENSCJAP00000030315	RRM domain-containing protein.	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.	0.619
ENSCJAP00000062019	SFPQ	ENSCJAP00000062019	ENSCJAP00000002551	RRM domain-containing protein.	Splicing factor, proline-and glutamine-rich.	0.825
ENSCJAP00000062654	ENSCJAP00000062019	ENSCJAP00000062654	ENSCJAP00000062019	RRM domain-containing protein.	RRM domain-containing protein.	0.894
ENSCJAP00000062654	ENSCJAP00000068136	ENSCJAP00000062654	ENSCJAP00000068136	RRM domain-containing protein.	Uncharacterized protein.	0.823
ENSCJAP00000062654	PSPC1	ENSCJAP00000062654	ENSCJAP00000008299	RRM domain-containing protein.	Paraspeckle component 1.	0.848
ENSCJAP00000062654	SFPQ	ENSCJAP00000062654	ENSCJAP00000002551	RRM domain-containing protein.	Splicing factor, proline-and glutamine-rich.	0.819
ENSCJAP00000064207	ENSCJAP00000062019	ENSCJAP00000064207	ENSCJAP00000062019	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.	RRM domain-containing protein.	0.619
ENSCJAP00000068136	ENSCJAP00000062019	ENSCJAP00000068136	ENSCJAP00000062019	Uncharacterized protein.	RRM domain-containing protein.	0.819
ENSCJAP00000068136	ENSCJAP00000062654	ENSCJAP00000068136	ENSCJAP00000062654	Uncharacterized protein.	RRM domain-containing protein.	0.823
ENSCJAP00000068136	PSPC1	ENSCJAP00000068136	ENSCJAP00000008299	Uncharacterized protein.	Paraspeckle component 1.	0.886
ENSCJAP00000068453	ENSCJAP00000062019	ENSCJAP00000068453	ENSCJAP00000062019	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.	RRM domain-containing protein.	0.619