KLF3 protein (Callithrix jacchus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KLF3

Kruppel like factor 3. (366 aa)

Predicted Functional Partners:

CTBP2

0.735

FHL3

0.669

SIN3A

0.632

NICN1

0.573

TMEM178A

0.568

FTSJ3

0.515

RIPOR2

0.506

CTBP1

0.461

ENSCJAP00000066283

0.461

ENSCJAP00000071487

0.461

Your Current Organism:

Callithrix jacchus

NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CTBP1	CTBP2	ENSCJAP00000002822	ENSCJAP00000044722	2-Hacid_dh_C domain-containing protein.	C-terminal binding protein 2.	0.971
CTBP1	KLF3	ENSCJAP00000002822	ENSCJAP00000062426	2-Hacid_dh_C domain-containing protein.	Kruppel like factor 3.	0.461
CTBP2	CTBP1	ENSCJAP00000044722	ENSCJAP00000002822	C-terminal binding protein 2.	2-Hacid_dh_C domain-containing protein.	0.971
CTBP2	ENSCJAP00000066283	ENSCJAP00000044722	ENSCJAP00000066283	C-terminal binding protein 2.	Uncharacterized protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	0.726
CTBP2	ENSCJAP00000071487	ENSCJAP00000044722	ENSCJAP00000071487	C-terminal binding protein 2.	Uncharacterized protein.	0.722
CTBP2	KLF3	ENSCJAP00000044722	ENSCJAP00000062426	C-terminal binding protein 2.	Kruppel like factor 3.	0.735
ENSCJAP00000066283	CTBP2	ENSCJAP00000066283	ENSCJAP00000044722	Uncharacterized protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	C-terminal binding protein 2.	0.726
ENSCJAP00000066283	KLF3	ENSCJAP00000066283	ENSCJAP00000062426	Uncharacterized protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	Kruppel like factor 3.	0.461
ENSCJAP00000071487	CTBP2	ENSCJAP00000071487	ENSCJAP00000044722	Uncharacterized protein.	C-terminal binding protein 2.	0.722
ENSCJAP00000071487	KLF3	ENSCJAP00000071487	ENSCJAP00000062426	Uncharacterized protein.	Kruppel like factor 3.	0.461
FHL3	KLF3	ENSCJAP00000055821	ENSCJAP00000062426	Four and a half LIM domains protein 3 isoform 1.	Kruppel like factor 3.	0.669
FTSJ3	KLF3	ENSCJAP00000036461	ENSCJAP00000062426	pre-rRNA processing protein FTSJ3; Probable methyltransferase involved in the processing of the 34S pre-rRNA to 18S rRNA and in 40S ribosomal subunit formation. Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily.	Kruppel like factor 3.	0.515
FTSJ3	NICN1	ENSCJAP00000036461	ENSCJAP00000007257	pre-rRNA processing protein FTSJ3; Probable methyltransferase involved in the processing of the 34S pre-rRNA to 18S rRNA and in 40S ribosomal subunit formation. Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily.	Nicolin-1.	0.772
FTSJ3	TMEM178A	ENSCJAP00000036461	ENSCJAP00000065732	pre-rRNA processing protein FTSJ3; Probable methyltransferase involved in the processing of the 34S pre-rRNA to 18S rRNA and in 40S ribosomal subunit formation. Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily.	Transmembrane protein 178A isoform 1.	0.772
KLF3	CTBP1	ENSCJAP00000062426	ENSCJAP00000002822	Kruppel like factor 3.	2-Hacid_dh_C domain-containing protein.	0.461
KLF3	CTBP2	ENSCJAP00000062426	ENSCJAP00000044722	Kruppel like factor 3.	C-terminal binding protein 2.	0.735
KLF3	ENSCJAP00000066283	ENSCJAP00000062426	ENSCJAP00000066283	Kruppel like factor 3.	Uncharacterized protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	0.461
KLF3	ENSCJAP00000071487	ENSCJAP00000062426	ENSCJAP00000071487	Kruppel like factor 3.	Uncharacterized protein.	0.461
KLF3	FHL3	ENSCJAP00000062426	ENSCJAP00000055821	Kruppel like factor 3.	Four and a half LIM domains protein 3 isoform 1.	0.669
KLF3	FTSJ3	ENSCJAP00000062426	ENSCJAP00000036461	Kruppel like factor 3.	pre-rRNA processing protein FTSJ3; Probable methyltransferase involved in the processing of the 34S pre-rRNA to 18S rRNA and in 40S ribosomal subunit formation. Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily.	0.515