STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
URODUroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family. (375 aa)    
Predicted Functional Partners:
PPOX
Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX.
  
 
 0.996
CPOX
Coproporphyrinogen oxidase.
  
 0.994
HMBS
Porphobilinogen deaminase isoform 1.
 0.980
FECH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX.
 
  
 0.952
UROS
Uroporphyrinogen III synthase.
  
 
 0.935
ALAD
Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family.
 
 
 0.906
ALAS1
5'-aminolevulinate synthase 1.
      
 0.750
PUM2
Pumilio homolog 2.
    
 
 0.730
TYW1
tRNA wybutosine-synthesizing protein 1 homolog.
    
 0.711
MOCS1
Molybdenum cofactor synthesis 1.
    
  0.685
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.