STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MAP1SMicrotubule-associated protein 1S. (1063 aa)    
Predicted Functional Partners:
RASSF1
Ras association domain family member 1.
    
 
 0.815
SQSTM1
Sequestosome-1 isoform 1.
    
 
 0.813
BECN1
Beclin-1.
      
 0.795
ATG12
Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.
    
 
 0.777
ATG5
Autophagy protein 5; Involved in autophagic vesicle formation.
      
 0.722
LRPPRC
Leucine rich pentatricopeptide repeat containing.
    
 
 0.671
UBE3A
Ubiquitin-protein ligase E3A; E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and transfers it to its substrates.
      
 0.670
HGSNAT
Heparan-alpha-glucosaminide N-acetyltransferase.
      
 0.649
SPIDR
DUF4503 domain-containing protein.
      
 0.635
MAP1LC3B
Microtubule-associated proteins 1A/1B light chain 3B.
    
 
 0.631
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.