STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100415326Histone H2B; Belongs to the histone H2B family. (126 aa)    
Predicted Functional Partners:
H2AC21
Histone H2A; Belongs to the histone H2A family.
 
 0.868
LOC100394455
Histone H3; Belongs to the histone H3 family.
 
 
 0.857
H2AC6
Histone H2A; Belongs to the histone H2A family.
 
 0.818
H2AC20
Histone H2A; Belongs to the histone H2A family.
 
 0.795
HDAC1
Histone deacetylase 1; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.
    
 0.795
LOC100407409
Histone H2A; Belongs to the histone H2A family.
 
 0.761
LEO1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
 0.759
F7EIE8_CALJA
Histone H2A; Belongs to the histone H2A family.
 
 0.759
LOC100414961
Histone H2A; Belongs to the histone H2A family.
 
 0.759
LOC100414961-2
Histone H2A type 1.
 
 0.759
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.