Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CLNS1A | ENSCJAP00000072345 | ENSCJAP00000077353 | ENSCJAP00000072345 | Methylosome subunit pICln. | Uncharacterized protein. | 0.911 |
CLNS1A | GEMIN2 | ENSCJAP00000077353 | ENSCJAP00000029972 | Methylosome subunit pICln. | Gem-associated protein 2; The SMN complex plays a catalyst role in the assembly of small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Thereby, plays an important role in the splicing of cellular pre-mRNAs; Belongs to the gemin-2 family. | 0.402 |
CLNS1A | GEMIN5 | ENSCJAP00000077353 | ENSCJAP00000013783 | Methylosome subunit pICln. | Gem nuclear organelle associated protein 5. | 0.482 |
CLNS1A | LOC100385179 | ENSCJAP00000077353 | ENSCJAP00000064428 | Methylosome subunit pICln. | Survival motor neuron protein isoform d. | 0.938 |
CLNS1A | LSM10 | ENSCJAP00000077353 | ENSCJAP00000063992 | Methylosome subunit pICln. | U7 snRNA-associated Sm-like protein LSm10. | 0.936 |
CLNS1A | SNRPD1 | ENSCJAP00000077353 | ENSCJAP00000068431 | Methylosome subunit pICln. | Small nuclear ribonucleoprotein Sm D1; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. May act as a charged protein scaffold to promote snRNP assembly or strengthen snRNP-snRNP interactions through non-specific electrostatic contacts with RNA. | 0.988 |
CLNS1A | SNRPD3 | ENSCJAP00000077353 | ENSCJAP00000052700 | Methylosome subunit pICln. | Small nuclear ribonucleoprotein Sm D3; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone pre-mRNA 3'-end processing. | 0.958 |
CLNS1A | SNRPF | ENSCJAP00000077353 | ENSCJAP00000004916 | Methylosome subunit pICln. | Small nuclear ribonucleoprotein polypeptide F. | 0.916 |
DDX20 | ENSCJAP00000072345 | ENSCJAP00000024707 | ENSCJAP00000072345 | DEAD-box helicase 20. | Uncharacterized protein. | 0.859 |
DDX20 | GEMIN2 | ENSCJAP00000024707 | ENSCJAP00000029972 | DEAD-box helicase 20. | Gem-associated protein 2; The SMN complex plays a catalyst role in the assembly of small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Thereby, plays an important role in the splicing of cellular pre-mRNAs; Belongs to the gemin-2 family. | 0.997 |
DDX20 | GEMIN4 | ENSCJAP00000024707 | ENSCJAP00000060140 | DEAD-box helicase 20. | Gem nuclear organelle associated protein 4. | 0.997 |
DDX20 | GEMIN5 | ENSCJAP00000024707 | ENSCJAP00000013783 | DEAD-box helicase 20. | Gem nuclear organelle associated protein 5. | 0.997 |
DDX20 | LOC100385179 | ENSCJAP00000024707 | ENSCJAP00000064428 | DEAD-box helicase 20. | Survival motor neuron protein isoform d. | 0.978 |
DDX20 | LSM10 | ENSCJAP00000024707 | ENSCJAP00000063992 | DEAD-box helicase 20. | U7 snRNA-associated Sm-like protein LSm10. | 0.794 |
DDX20 | SNRPD1 | ENSCJAP00000024707 | ENSCJAP00000068431 | DEAD-box helicase 20. | Small nuclear ribonucleoprotein Sm D1; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. May act as a charged protein scaffold to promote snRNP assembly or strengthen snRNP-snRNP interactions through non-specific electrostatic contacts with RNA. | 0.809 |
DDX20 | SNRPD3 | ENSCJAP00000024707 | ENSCJAP00000052700 | DEAD-box helicase 20. | Small nuclear ribonucleoprotein Sm D3; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone pre-mRNA 3'-end processing. | 0.793 |
DDX20 | SNRPF | ENSCJAP00000024707 | ENSCJAP00000004916 | DEAD-box helicase 20. | Small nuclear ribonucleoprotein polypeptide F. | 0.840 |
ENSCJAP00000072345 | CLNS1A | ENSCJAP00000072345 | ENSCJAP00000077353 | Uncharacterized protein. | Methylosome subunit pICln. | 0.911 |
ENSCJAP00000072345 | DDX20 | ENSCJAP00000072345 | ENSCJAP00000024707 | Uncharacterized protein. | DEAD-box helicase 20. | 0.859 |
ENSCJAP00000072345 | GEMIN4 | ENSCJAP00000072345 | ENSCJAP00000060140 | Uncharacterized protein. | Gem nuclear organelle associated protein 4. | 0.854 |
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