STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PTPRDReceptor-type tyrosine-protein phosphatase delta isoform 1. (1916 aa)    
Predicted Functional Partners:
SLITRK1
SLIT and NTRK like family member 1.
    
 0.944
IL1RAP
Interleukin-1 receptor accessory protein isoform 3.
    
 0.938
IL1RAPL1
Interleukin 1 receptor accessory protein like 1.
    
 0.918
SLITRK2
SLIT and NTRK like family member 2.
    
 0.886
PPFIA3
PTPRF interacting protein alpha 3.
    
 0.874
SLITRK3
SLIT and NTRK like family member 3.
   
 0.871
LRFN5
Leucine-rich repeat and fibronectin type-III domain-containing protein 5.
    
0.854
LRFN1
Leucine rich repeat and fibronectin type III domain containing 1.
   
 0.807
IL1RAPL2
Interleukin 1 receptor accessory protein like 2.
   
 0.805
NLGN3
Neuroligin-3 isoform 1.
    
 
 0.798
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.