RBMX protein (Callithrix jacchus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Cooccurrence

Coexpression

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[Homology]

Score

RBMX

RRM domain-containing protein. (392 aa)

Predicted Functional Partners:

HNRNPK

0.686

TSPYL2

0.663

RPS4X

0.611

HNRNPC-2

0.598

HNRNPM

0.593

TRA2B

0.578

ENSCJAP00000054411

0.573

HNRNPF

0.552

NCBP1

0.549

HNRNPA2B1

0.548

Your Current Organism:

Callithrix jacchus

NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCJAP00000054411	HNRNPA2B1	ENSCJAP00000054411	ENSCJAP00000014695	RRM domain-containing protein.	Heterogeneous nuclear ribonucleoproteins A2/B1 isoform B1.	0.538
ENSCJAP00000054411	HNRNPK	ENSCJAP00000054411	ENSCJAP00000046691	RRM domain-containing protein.	Heterogeneous nuclear ribonucleoprotein K isoform a.	0.454
ENSCJAP00000054411	NCBP1	ENSCJAP00000054411	ENSCJAP00000020106	RRM domain-containing protein.	Nuclear cap-binding protein subunit 1.	0.781
ENSCJAP00000054411	RBMX	ENSCJAP00000054411	ENSCJAP00000066442	RRM domain-containing protein.	RRM domain-containing protein.	0.573
ENSCJAP00000054411	TRA2B	ENSCJAP00000054411	ENSCJAP00000027099	RRM domain-containing protein.	Transformer-2 protein homolog beta isoform 1.	0.520
HNRNPA2B1	ENSCJAP00000054411	ENSCJAP00000014695	ENSCJAP00000054411	Heterogeneous nuclear ribonucleoproteins A2/B1 isoform B1.	RRM domain-containing protein.	0.538
HNRNPA2B1	HNRNPC-2	ENSCJAP00000014695	ENSCJAP00000055006	Heterogeneous nuclear ribonucleoproteins A2/B1 isoform B1.	Uncharacterized protein.	0.818
HNRNPA2B1	HNRNPF	ENSCJAP00000014695	ENSCJAP00000015301	Heterogeneous nuclear ribonucleoproteins A2/B1 isoform B1.	Heterogeneous nuclear ribonucleoprotein F.	0.835
HNRNPA2B1	HNRNPK	ENSCJAP00000014695	ENSCJAP00000046691	Heterogeneous nuclear ribonucleoproteins A2/B1 isoform B1.	Heterogeneous nuclear ribonucleoprotein K isoform a.	0.941
HNRNPA2B1	HNRNPM	ENSCJAP00000014695	ENSCJAP00000020089	Heterogeneous nuclear ribonucleoproteins A2/B1 isoform B1.	Heterogeneous nuclear ribonucleoprotein M.	0.879
HNRNPA2B1	NCBP1	ENSCJAP00000014695	ENSCJAP00000020106	Heterogeneous nuclear ribonucleoproteins A2/B1 isoform B1.	Nuclear cap-binding protein subunit 1.	0.504
HNRNPA2B1	RBMX	ENSCJAP00000014695	ENSCJAP00000066442	Heterogeneous nuclear ribonucleoproteins A2/B1 isoform B1.	RRM domain-containing protein.	0.548
HNRNPA2B1	TRA2B	ENSCJAP00000014695	ENSCJAP00000027099	Heterogeneous nuclear ribonucleoproteins A2/B1 isoform B1.	Transformer-2 protein homolog beta isoform 1.	0.878
HNRNPC-2	HNRNPA2B1	ENSCJAP00000055006	ENSCJAP00000014695	Uncharacterized protein.	Heterogeneous nuclear ribonucleoproteins A2/B1 isoform B1.	0.818
HNRNPC-2	HNRNPF	ENSCJAP00000055006	ENSCJAP00000015301	Uncharacterized protein.	Heterogeneous nuclear ribonucleoprotein F.	0.535
HNRNPC-2	HNRNPK	ENSCJAP00000055006	ENSCJAP00000046691	Uncharacterized protein.	Heterogeneous nuclear ribonucleoprotein K isoform a.	0.843
HNRNPC-2	HNRNPM	ENSCJAP00000055006	ENSCJAP00000020089	Uncharacterized protein.	Heterogeneous nuclear ribonucleoprotein M.	0.734
HNRNPC-2	NCBP1	ENSCJAP00000055006	ENSCJAP00000020106	Uncharacterized protein.	Nuclear cap-binding protein subunit 1.	0.623
HNRNPC-2	RBMX	ENSCJAP00000055006	ENSCJAP00000066442	Uncharacterized protein.	RRM domain-containing protein.	0.598
HNRNPC-2	TRA2B	ENSCJAP00000055006	ENSCJAP00000027099	Uncharacterized protein.	Transformer-2 protein homolog beta isoform 1.	0.757

page 1 of 4

Network Stats

number of nodes:

11

number of edges:

25

average node degree:

4.55

avg. local clustering coefficient:

0.782

expected number of edges:

11

PPI enrichment p-value:

0.000292

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0006749

Glutathione metabolic process

3 of 47

2.11

1.09

0.0090

GO:0006534

Cysteine metabolic process

2 of 8

2.71

1.03

0.0133

GO:0009064

Glutamine family amino acid metabolic process

3 of 65

1.97

1.01

0.0117

GO:0006750

Glutathione biosynthetic process

2 of 10

2.61

1.01

0.0146

GO:1901605

Alpha-amino acid metabolic process

4 of 170

1.68

1.0

0.0090

(more ...)

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0016879

Ligase activity, forming carbon-nitrogen bonds

3 of 44

2.14

1.28

0.0037

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0005814

Centriole

3 of 108

1.75

0.83

0.0239

GO:0005813

Centrosome

4 of 413

1.29

0.71

0.0239

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:28614

Glutathione metabolism, and Oxidoreductase activity, acting on a sulfur group of donors

8 of 127

2.11

5.12

1.06e-12

CL:28680

Gamma-glutamyltranspeptidase, and Glutamate-cysteine ligase complex

3 of 7

2.94

2.75

9.75e-06

CL:28789

Mixed, incl. Metalloaminopeptidase activity, and Aspartate and asparagine metabolism

4 of 38

2.33

2.64

8.07e-06

CL:28620

Glutathione conjugation, and Glutathione peroxidase

4 of 39

2.32

2.63

8.07e-06

CL:28845

Negative regulation of cilium assembly, and Domain in ubiquitin-specific proteases.

3 of 10

2.79

2.57

1.94e-05

(more ...)

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map00480

Glutathione metabolism

5 of 126

1.91

2.78

5.66e-07

map00270

Cysteine and methionine metabolism

4 of 78

2.02

2.52

5.36e-06

map00250

Alanine, aspartate and glutamate metabolism

2 of 64

1.8

0.84

0.0229

map04216

Ferroptosis

2 of 74

1.74

0.82

0.0243

map01100

Metabolic pathways

9 of 3053

0.78

0.72

4.65e-05

(more ...)

Reactome Pathways

pathway

description

count in network

strength

signal

false discovery rate

MAP-174403

Glutathione synthesis and recycling

4 of 19

2.63

3.37

4.63e-07

MAP-156590

Glutathione conjugation

4 of 34

2.38

2.96

1.92e-06

MAP-156580

Phase II - Conjugation of compounds

4 of 95

1.93

2.02

6.44e-05

MAP-211859

Biological oxidations

4 of 254

1.51

1.17

0.0022

MAP-5620912

Anchoring of the basal body to the plasma membrane

3 of 105

1.76

1.11

0.0058

(more ...)

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0097721

Ciliary vesicle

2 of 4

3.01

1.32

0.0042

GOCC:0005814

Centriole

3 of 59

2.01

1.23

0.0042

GOCC:0005815

Microtubule organizing center

4 of 215

1.58

1.1

0.0042

GOCC:0005813

Centrosome

3 of 120

1.71

0.99

0.0098

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