STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VTI1AVesicle transport through interaction with t-SNAREs 1A. (224 aa)    
Predicted Functional Partners:
STX6
Syntaxin 6; Belongs to the syntaxin family.
   
 0.998
YKT6
Synaptobrevin homolog YKT6; Belongs to the synaptobrevin family.
    
 0.997
STX5
Syntaxin-5 isoform 1; Belongs to the syntaxin family.
    
 
 0.996
VAMP4
Vesicle associated membrane protein 4.
   
 0.996
STX16
Syntaxin 16; Belongs to the syntaxin family.
   
 0.993
STX8
Syntaxin 8.
   
 0.993
STX10
Syntaxin 10; Belongs to the syntaxin family.
   
 0.990
VAMP8
Vesicle associated membrane protein 8.
   
 0.984
STX7
Syntaxin 7 (Predicted); Belongs to the syntaxin family.
   
 0.983
VPS11
Vacuolar protein sorting-associated protein 11 homolog; Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport and autophagic pathways. Believed to act as a core component of the putative HOPS and CORVET endosomal tethering complexes. Belongs to the VPS11 family.
    
 
 0.971
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.