STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMKR1Small lysine rich protein 1. (65 aa)    
Predicted Functional Partners:
FAU
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
 0.939
ENSCJAP00000077762
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
 0.939
ENSCJAP00000078156
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
 0.939
ENSCJAP00000078253
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
 0.939
RPS3
KH type-2 domain-containing protein; Belongs to the universal ribosomal protein uS3 family.
  
 0.903
MRPS6
28S ribosomal protein S6, mitochondrial.
  
 0.902
MRPL19
39S ribosomal protein L19, mitochondrial.
  
 
 0.849
MRPL20
Mitochondrial ribosomal protein L20.
  
 
 0.849
MRPL32
Mitochondrial ribosomal protein L32.
  
 
 0.847
TUFM
Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
   
 0.846
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.