STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCJAP00000068157Calponin-homology (CH) domain-containing protein. (150 aa)    
Predicted Functional Partners:
MYL9
Myosin regulatory light polypeptide 9 isoform a.
   
 0.706
CNN1
Calponin; Thin filament-associated protein that is implicated in the regulation and modulation of smooth muscle contraction. It is capable of binding to actin, calmodulin, troponin C and tropomyosin. The interaction of calponin with actin inhibits the actomyosin Mg-ATPase activity.
  
 
0.636
ACTG2
Uncharacterized protein.
   
 0.584
WDR1
WD_REPEATS_REGION domain-containing protein.
   
 
 0.545
MYH11
Myosin heavy chain 11; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
   
  
 0.532
EFHB
EF-hand domain family member B.
   
   0.518
VCL
Vinculin.
   
 
 0.516
PACRGL
PACRG-like protein isoform 3.
    
 
 0.511
PACRG
Parkin coregulated.
    
 
 0.511
EFHC1
EF-hand domain-containing protein 1 isoform 1.
   
 
 0.510
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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