STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARHGEF4Uncharacterized protein. (1911 aa)    
Predicted Functional Partners:
APC
Adenomatous polyposis coli protein isoform b.
   
 0.992
RAC3
Ras-related C3 botulinum toxin substrate 3.
    
 0.947
SPATA13
Uncharacterized protein.
    
 
0.906
APC2
APC regulator of WNT signaling pathway 2.
   
 
 0.780
CDC42
Cell division control protein 42 homolog isoform 1.
    
 0.678
ENSCJAP00000069652
Uncharacterized protein.
    
 0.678
ENSCJAP00000073331
Uncharacterized protein.
    
 0.678
CDHR5
Cadherin related family member 5.
   
  
 0.599
KHDRBS2
KH domain-containing, RNA-binding, signal transduction-associated protein 2.
   
  
 0.593
MAPRE3
Microtubule-associated protein RP/EB family member 3.
      
 0.563
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.