STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LRRC27Uncharacterized protein. (89 aa)    
Predicted Functional Partners:
CNOT1
CCR4-NOT transcription complex subunit 1.
   
 0.893
CNOT9
Uncharacterized protein.
    
 0.843
CNOT3
CCR4-NOT transcription complex subunit 3.
    
 0.839
CNOT2
CCR4-NOT transcription complex subunit 2.
    
 0.836
CNOT4
CCR4-NOT transcription complex subunit 4 isoform f.
    
 0.828
CNOT7
CCR4-NOT transcription complex subunit 7 isoform 1.
    
 0.799
CNOT8
CCR4-NOT transcription complex subunit 8.
    
 0.799
DDX6
Putative ATP-dependent RNA helicase DDX6; Belongs to the DEAD box helicase family.
    
 0.758
CNOT10
CCR4-NOT transcription complex subunit 10.
    
 0.667
POLR2A
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.652
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.