STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPS6KL1Ribosomal protein S6 kinase like 1. (623 aa)    
Predicted Functional Partners:
RINT1
RAD50-interacting protein 1.
    
 0.747
STX18
Syntaxin 18.
   
 0.742
USE1
Unconventional SNARE in the ER 1.
    
 0.737
NBAS
Neuroblastoma amplified sequence.
   
 0.694
ZW10
Zw10 kinetochore protein.
    
 0.692
ZNF541
Zinc finger protein 541.
   
  
 0.657
ZNF710
Zinc finger protein 710.
    
 
 0.649
POLD1
DNA polymerase.
      
 0.644
SEC22A
SEC22 homolog A, vesicle trafficking protein; Belongs to the synaptobrevin family.
   
 0.539
SEC22B
SEC22 homolog B, vesicle trafficking protein (gene/pseudogene); Belongs to the synaptobrevin family.
   
 0.539
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.