STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARL13BADP ribosylation factor like GTPase 13B. (536 aa)    
Predicted Functional Partners:
INPP5E
Inositol polyphosphate-5-phosphatase E.
   
 
 0.926
PDE6D
Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta; Promotes the release of prenylated target proteins from cellular membranes. Modulates the activity of prenylated or palmitoylated Ras family members by regulating their subcellular location. Required for normal ciliary targeting of farnesylated target proteins, such as INPP5E. Modulates the subcellular location of target proteins by acting as a GTP specific dissociation inhibitor (GDI). Increases the affinity of ARL3 for GTP by several orders of magnitude. Stabilizes ARL3-GTP by decreasing the nucleotide [...]
     
 0.877
IFT88
Intraflagellar transport 88.
    
 0.873
GPR161
G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.
      
 0.824
CEP290
Centrosomal protein 290.
   
 
 0.811
COG8
Conserved oligomeric Golgi complex subunit 8; Belongs to the COG8 family.
   
 0.792
GALNT11
Polypeptide N-acetylgalactosaminyltransferase.
   
  
 0.776
ARL3
ADP-ribosylation factor-like protein 3; Belongs to the small GTPase superfamily. Arf family.
   
0.774
PKD2
Polycystin 2, transient receptor potential cation channel.
      
 0.747
COG6
Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.
    
 0.744
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.