STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMCHD1SMC hinge domain-containing protein. (2007 aa)    
Predicted Functional Partners:
METTL4
Methyltransferase-like protein 4; Belongs to the MT-A70-like family.
   
  
 0.715
EMILIN2
Elastin microfibril interfacer 2.
 
    
 0.661
MYOT
Myotilin.
      
 0.614
CNBP
Uncharacterized protein.
    
 
 0.574
LARGE1
LARGE xylosyl- and glucuronyltransferase 1.
   
  
 0.572
PABPN1
BCL2L2-PABPN1 protein.
      
 0.565
FKRP
Fukutin-related protein.
    
 
 0.564
PDS5A
Sister chromatid cohesion protein PDS5 homolog A isoform 1.
   
  
 0.564
FRG1
Uncharacterized protein.
      
 0.562
CTCF
Transcriptional repressor CTCF isoform 1.
   
  
 0.539
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.