STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PCDHB13Protocadherin beta 13. (627 aa)    
Predicted Functional Partners:
NCKAP1
NCK associated protein 1.
    
 0.792
UGCG
Ceramide glucosyltransferase.
      
 0.620
PLCB3
1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase; The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes.
      
 0.620
HOXD11
Homeobox D11.
      
 0.620
PIGO
Phosphatidylinositol glycan anchor biosynthesis class O.
    
 
 0.586
MYBPC3
Myosin binding protein C, cardiac.
      
 0.581
TACR1
Substance-P receptor isoform long; Belongs to the G-protein coupled receptor 1 family.
     
 0.572
NPTX1
Neuronal pentraxin-1.
      
 0.507
CTF1
Cardiotrophin 1.
      
 0.503
CXCL14
C-X-C motif chemokine ligand 14.
      
 0.463
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.