STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PVALEFParvalbumin like EF-hand containing. (149 aa)    
Predicted Functional Partners:
CASK
Uncharacterized protein; Belongs to the MAGUK family.
    
 0.657
MYO9B
Myosin IXB; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
    
 0.481
MYO9A
Myosin IXA; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
    
 0.481
DCLK1
Doublecortin like kinase 1.
   
 0.466
ENSCJAP00000069800
Uncharacterized protein.
   
 0.466
XPC
XPC complex subunit, DNA damage recognition and repair factor.
    
 0.458
TNNI1
Uncharacterized protein.
   
 0.441
TNNI3
Uncharacterized protein.
   
 0.441
ENSCJAP00000055273
Uncharacterized protein.
   
 0.441
ENSCJAP00000076943
Uncharacterized protein.
   
 0.441
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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